WEB-based GEne SeT AnaLysis Toolkit
 
Translating gene lists into biological insights...
 


User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID. The second row lists the following statistics:
Finally, genes in the gene set are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:Transcription Target       Name:hsa_V$GABP_B       ID:DB_ID:2059
C=252; O=5; E=0.41; R=12.22; rawP=5.81e-05; adjP=0.0053
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000135956 NA TMEM127 transmembrane protein 127 55654 ENSG00000135956
2  ENSG00000110917 NA MLEC malectin 9761 ENSG00000110917
3  ENSG00000116521 NA SCAMP3 secretory carrier membrane protein 3 10067 ENSG00000116521
4  ENSG00000156599 NA ZDHHC5 zinc finger, DHHC-type containing 5 25921 ENSG00000156599
5  ENSG00000123989 NA CHPF chondroitin polymerizing factor 79586 ENSG00000123989


Database:Transcription Target       Name:hsa_CAGCTG_V$AP4_Q5       ID:DB_ID:2403
C=1502; O=9; E=2.44; R=3.69; rawP=0.0007; adjP=0.0184
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000130528 NA HRC histidine rich calcium binding protein 3270 ENSG00000130528
2  ENSG00000145730 NA PAM peptidylglycine alpha-amidating monooxygenase 5066 ENSG00000145730
3  ENSG00000102181 NA CD99L2 CD99 molecule-like 2 83692 ENSG00000102181
4  ENSG00000008853 NA RHOBTB2 Rho-related BTB domain containing 2 23221 ENSG00000008853
5  ENSG00000141639 NA MAPK4 mitogen-activated protein kinase 4 5596 ENSG00000141639
6  ENSG00000117984 NA CTSD cathepsin D 1509 ENSG00000117984
7  ENSG00000140859 NA KIFC3 kinesin family member C3 3801 ENSG00000140859
8  ENSG00000177830 NA CHID1 chitinase domain containing 1 66005 ENSG00000177830
9  ENSG00000123989 NA CHPF chondroitin polymerizing factor 79586 ENSG00000123989


Database:Transcription Target       Name:hsa_V$NFY_Q6       ID:DB_ID:1974
C=258; O=4; E=0.42; R=9.55; rawP=0.0008; adjP=0.0184
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000110917 NA MLEC malectin 9761 ENSG00000110917
2  ENSG00000156599 NA ZDHHC5 zinc finger, DHHC-type containing 5 25921 ENSG00000156599
3  ENSG00000135506 NA OS9 osteosarcoma amplified 9, endoplasmic reticulum lectin 10956 ENSG00000135506
4  ENSG00000084090 NA STARD7 StAR-related lipid transfer (START) domain containing 7 56910 ENSG00000084090


Database:Transcription Target       Name:hsa_SCGGAAGY_V$ELK1_02       ID:DB_ID:2413
C=1176; O=8; E=1.91; R=4.19; rawP=0.0006; adjP=0.0184
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000135956 NA TMEM127 transmembrane protein 127 55654 ENSG00000135956
2  ENSG00000110917 NA MLEC malectin 9761 ENSG00000110917
3  ENSG00000144736 NA SHQ1 SHQ1 homolog (S. cerevisiae) 55164 ENSG00000144736
4  ENSG00000124155 NA PIGT phosphatidylinositol glycan anchor biosynthesis, class T 51604 ENSG00000124155
5  ENSG00000156599 NA ZDHHC5 zinc finger, DHHC-type containing 5 25921 ENSG00000156599
6  ENSG00000197037 NA ZNF498 zinc finger protein 498 221785 ENSG00000197037
7  ENSG00000177830 NA CHID1 chitinase domain containing 1 66005 ENSG00000177830
8  ENSG00000123989 NA CHPF chondroitin polymerizing factor 79586 ENSG00000123989


Database:Transcription Target       Name:hsa_TCANNTGAY_V$SREBP1_01       ID:DB_ID:2453
C=466; O=5; E=0.76; R=6.61; rawP=0.0010; adjP=0.0184
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000064601 NA CTSA cathepsin A 5476 ENSG00000064601
2  ENSG00000197746 NA PSAP prosaposin 5660 ENSG00000197746
3  ENSG00000117984 NA CTSD cathepsin D 1509 ENSG00000117984
4  ENSG00000181264 NA TMEM136 transmembrane protein 136 219902 ENSG00000181264
5  ENSG00000071553 NA ATP6AP1 ATPase, H+ transporting, lysosomal accessory protein 1 537 ENSG00000071553


Database:Transcription Target       Name:hsa_RGAGGAARY_V$PU1_Q6       ID:DB_ID:2447
C=495; O=5; E=0.80; R=6.22; rawP=0.0013; adjP=0.0199
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000125912 NA NCLN nicalin 56926 ENSG00000125912
2  ENSG00000064601 NA CTSA cathepsin A 5476 ENSG00000064601
3  ENSG00000105223 NA PLD3 phospholipase D family, member 3 23646 ENSG00000105223
4  ENSG00000053918 NA KCNQ1 potassium voltage-gated channel, KQT-like subfamily, member 1 3784 ENSG00000053918
5  ENSG00000140859 NA KIFC3 kinesin family member C3 3801 ENSG00000140859


Database:Transcription Target       Name:hsa_TGAYRTCA_V$ATF3_Q6       ID:DB_ID:2406
C=531; O=5; E=0.86; R=5.80; rawP=0.0017; adjP=0.0223
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000187189 NA TSPYL4 TSPY-like 4 23270 ENSG00000187189
2  ENSG00000109079 NA TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) 7126 ENSG00000109079
3  ENSG00000134333 NA LDHA lactate dehydrogenase A 3939 ENSG00000134333
4  ENSG00000123989 NA CHPF chondroitin polymerizing factor 79586 ENSG00000123989
5  ENSG00000071553 NA ATP6AP1 ATPase, H+ transporting, lysosomal accessory protein 1 537 ENSG00000071553


Database:Transcription Target       Name:hsa_V$CREB_01       ID:DB_ID:1865
C=261; O=3; E=0.42; R=7.08; rawP=0.0089; adjP=0.0273
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000109079 NA TNFAIP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) 7126 ENSG00000109079
2  ENSG00000134333 NA LDHA lactate dehydrogenase A 3939 ENSG00000134333
3  ENSG00000123989 NA CHPF chondroitin polymerizing factor 79586 ENSG00000123989


Database:Transcription Target       Name:hsa_V$AP2GAMMA_01       ID:DB_ID:2124
C=246; O=3; E=0.40; R=7.51; rawP=0.0076; adjP=0.0273
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000064601 NA CTSA cathepsin A 5476 ENSG00000064601
2  ENSG00000105290 NA APLP1 amyloid beta (A4) precursor-like protein 1 333 ENSG00000105290
3  ENSG00000070413 NA DGCR2 DiGeorge syndrome critical region gene 2 9993 ENSG00000070413


Database:Transcription Target       Name:hsa_V$CREB_Q2       ID:DB_ID:1968
C=262; O=3; E=0.43; R=7.05; rawP=0.0090; adjP=0.0273
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000170145 NA SIK2 salt-inducible kinase 2 23235 ENSG00000170145
2  ENSG00000134333 NA LDHA lactate dehydrogenase A 3939 ENSG00000134333
3  ENSG00000123989 NA CHPF chondroitin polymerizing factor 79586 ENSG00000123989




WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).